PlantPromoterDB promoter information of AT3G20460

Summary of Gene (AT3G20460)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G20460 TAIR NCBI
Gene model	AT3G20460
Description	sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05165.3); Has 17047 Blast hits to 16548 proteins in 1166 species: Archae - 244; Bacteria - 5638; Metazoa - 4631; Fungi - 4215; Plants - 1317; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 7130350-7131549)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G20460 5'->3' (+) Promoter sequence AT3G20440.1 AT3G20440.2 AT3G20450.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G20460

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak C 5 + 7134979 -71

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`C`	5	+	7134979	-71

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box ATATAATG + 7134948 7134955 -102 -95

Y Patch TCTTTCCT + 7134995 7135002 -55 -48

Y Patch CTCTCTCTCT + 7135018 7135027 -32 -23

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ATATAATG`	+	7134948	7134955	-102	-95
Y Patch	`TCTTTCCT`	+	7134995	7135002	-55	-48
Y Patch	`CTCTCTCTCT`	+	7135018	7135027	-32	-23
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CACGTCAT + 7134911 7134918 -139 -132

AtREG483 CACGTCAT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CACGTCAT`		+	7134911	7134918	-139	-132
	AtREG483	`CACGTCAT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak C clone - 7131268 AT3G20440.1, AT3G20440.2, AT3G20450.1

TSS clone A clone - 7130436 AT3G20440.1, AT3G20440.2

TSS clone peak T clone - 7130435 AT3G20440.1, AT3G20440.2

TSS clone G clone - 7130404 AT3G20440.1, AT3G20440.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`C`	clone	-	7131268	AT3G20440.1, AT3G20440.2, AT3G20450.1
TSS clone	`A`	clone	-	7130436	AT3G20440.1, AT3G20440.2
TSS clone peak	`T`	clone	-	7130435	AT3G20440.1, AT3G20440.2
TSS clone	`G`	clone	-	7130404	AT3G20440.1, AT3G20440.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTC - 7130380 7130387 AT3G20440.1, AT3G20440.2

Y Patch CCTCTCTT - 7130437 7130444 AT3G20440.1, AT3G20440.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTC`	-	7130380	7130387	AT3G20440.1, AT3G20440.2
Y Patch	`CCTCTCTT`	-	7130437	7130444	AT3G20440.1, AT3G20440.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TCGTCGTT - 7130469 7130476 AT3G20440.1, AT3G20440.2

AtREG648 TCGTCGTT PPDB Motif PLACE Motif

REG CGGTTTGG - 7130523 7130530 AT3G20440.1, AT3G20440.2

AtREG550 CGGTTTGG PPDB Motif AACCG(G/A) PLACE Motif

REG TTGAACCGGTTTAA - 7130539 7130552 AT3G20440.1, AT3G20440.2

AtREG640 TTGAACCG       PPDB Motif AACCG(G/A) PLACE Motif

AtREG480 TGAACCGG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG528   GAACCGGT     PPDB Motif AACCG(G/A) PLACE Motif

AtREG436     ACCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412      CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG473       CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif

REG TCGGTTCGG - 7130555 7130563 AT3G20440.1, AT3G20440.2

AtREG575 TCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG456 CGGTTCGG PPDB Motif AACCG(G/A) PLACE Motif