PlantPromoterDB promoter information of AT3G20670
Summary of Gene (AT3G20670)
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Overview
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Focused view (chromosome 3: 7228472-7229671)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G20670 5'->3' (+) Promoter sequence AT3G20660.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G20670
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 7229411 | -61 |
| TSS clone peak | T | clone | + | 7229412 | -60 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGTATATATAAT | + | 7229374 | 7229385 | -98 | -87 |
| Y Patch | TCTCTCTTCC | + | 7229452 | 7229461 | -20 | -11 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAGGGTATTT | + | 7229207 | 7229216 | -265 | -256 | |||
| AtREG623 | AAGGGTAT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG567 | AGGGTATT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG602 | GGGTATTT | PPDB Motif | PLACE Motif | ||||||
| REG | ATAAACCGT | + | 7229281 | 7229289 | -191 | -183 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCAACGG | + | 7229303 | 7229311 | -169 | -161 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | CCGCGTGA | + | 7229325 | 7229332 | -147 | -140 | |||
| AtREG502 | CCGCGTGA | Drought | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | - | 7228594 | AT3G20660.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GATATAAATA | - | 7228618 | 7228627 | AT3G20660.1 | |
| Y Patch | CCTCCTTCTTC | - | 7228593 | 7228603 | AT3G20660.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTGACTTT | - | 7228849 | 7228856 | AT3G20660.1 | ||||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||