PlantPromoterDB promoter information of AT3G21175.3
Summary of Gene (AT3G21175.3)
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Overview
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Focused view (chromosome 3: 7421832-7423031)
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Genome position
from initiation codon AT3G21175.2 TSS from cDNA TSS information AT3G21175.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G21175.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 7422057 | -775 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCTTT | + | 7422117 | 7422127 | -715 | -705 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGACGCCGTTT | + | 7421945 | 7421956 | -887 | -876 | |||
| AtREG537 | ACGACGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG540 | GACGCCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG497 | ACGCCGTT | PPDB Motif | AAACG(C/G), CCAACGG | PLACE Motif | |||||
| AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAAAGGCCCAAG | + | 7421963 | 7421974 | -869 | -858 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG505 | GGCCCAAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | AACGACGACGT | + | 7421980 | 7421990 | -852 | -842 | |||
| AtREG648 | AACGACGA | PPDB Motif | PLACE Motif | ||||||
| AtREG526 | GACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||