PlantPromoterDB promoter information of AT3G21720
Summary of Gene (AT3G21720)
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Overview
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Focused view (chromosome 3: 7656873-7655674)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G21720 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G21720
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 20 | - | 7655945 | -72 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 7656011 | -138 |
| TSS clone | G | clone | - | 7655979 | -106 |
| TSS clone | A | clone | - | 7655972 | -99 |
| TSS clone | A | clone | - | 7655945 | -72 |
| TSS clone | T | clone | - | 7655944 | -71 |
| TSS clone | G | clone | - | 7655943 | -70 |
| TSS clone | C | clone | - | 7655942 | -69 |
| TSS clone | T | clone | - | 7655941 | -68 |
| TSS clone | T | clone | - | 7655921 | -48 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGTATATAAG | - | 7655971 | 7655980 | -98 | -107 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TACGTGTCAC | - | 7656135 | 7656144 | -262 | -271 | |||
| AtREG557 | TACGTGTC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG498 | CGTGTCAC | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||