PlantPromoterDB promoter information of AT3G22200.1
Summary of Gene (AT3G22200.1)
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Overview
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Focused view (chromosome 3: 7836236-7837435)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G22200.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G22200.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 5 | + | 7835165 | -121 |
| TSS peak | G | 4 | + | 7835276 | -10 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 7835148 | -138 |
| TSS clone | A | clone | + | 7835151 | -135 |
| TSS clone | A | clone | + | 7835158 | -128 |
| TSS clone | T | clone | + | 7835159 | -127 |
| TSS clone | G | clone | + | 7835165 | -121 |
| TSS clone | T | clone | + | 7835166 | -120 |
| TSS clone | T | clone | + | 7835171 | -115 |
| TSS clone | A | clone | + | 7835172 | -114 |
| TSS clone | A | clone | + | 7835177 | -109 |
| TSS clone | T | clone | + | 7835201 | -85 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCCTCTC | + | 7835186 | 7835194 | -100 | -92 |
| Y Patch | TCCTCTCTTT | + | 7835231 | 7835240 | -55 | -46 |
| Y Patch | TCTCTCTCTCTCT | + | 7835246 | 7835258 | -40 | -28 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGACACGTCAC | + | 7835072 | 7835083 | -214 | -203 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG481 | GACACGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||