PlantPromoterDB promoter information of AT3G22425.1
Summary of Gene (AT3G22425.1)
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Overview
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Focused view (chromosome 3: 7950110-7951309)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G22425.1 5'->3' (+) Promoter sequence AT3G22421.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G22425.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 7951064 | -46 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 7951055 | -55 |
| TSS clone | T | clone | + | 7951057 | -53 |
| TSS clone | T | clone | + | 7951090 | -20 |
| TSS clone | C | clone | + | 7951099 | -11 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACCGGTTAT | + | 7950927 | 7950936 | -183 | -174 | |||
| AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | CTTAACCG | + | 7950967 | 7950974 | -143 | -136 | |||
| AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | ACCGGTTCGGTTCGGTT | + | 7951007 | 7951023 | -103 | -87 | |||
| AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG456 | CGGTTCGGTTCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | GGTTCGGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||