PlantPromoterDB promoter information of AT3G22500
Summary of Gene (AT3G22500)
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Overview
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Focused view (chromosome 3: 7973865-7972666)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G22500 5'->3' (-) Promoter sequence AT3G22510.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G22500
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 7972904 | -39 |
| TSS clone | G | clone | - | 7972902 | -37 |
| TSS clone | T | clone | - | 7972901 | -36 |
| TSS clone peak | G | clone | - | 7972899 | -34 |
| TSS clone | A | clone | - | 7972892 | -27 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATATAAT | - | 7972930 | 7972941 | -65 | -76 |
| Y Patch | CCTCTCTTT | - | 7972937 | 7972945 | -72 | -80 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTGTCC | - | 7973163 | 7973170 | -298 | -305 | |||
| AtREG472 | ACGTGTCC | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | ACGTGTCT | - | 7973199 | 7973206 | -334 | -341 | |||
| AtREG470 | ACGTGTCT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | + | 7973401 | AT3G22510.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCTCTTCTCTT | + | 7973369 | 7973383 | AT3G22510.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGACACGT | + | 7973163 | 7973170 | AT3G22510.1 | ||||
| AtREG472 | GGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | AGACACGT | + | 7973199 | 7973206 | AT3G22510.1 | ||||
| AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | AAAGTCAA | + | 7973233 | 7973240 | AT3G22510.1 | ||||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||