Summary of Gene (AT3G23810)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G23810 5'->3' (-) Promoter sequence AT3G23805.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 8589716 | -45 |
TSS clone | T | clone | - | 8589713 | -42 |
TSS clone | T | clone | - | 8589710 | -39 |
TSS clone peak | T | clone | - | 8589709 | -38 |
TSS clone peak | A | clone | - | 8589707 | -36 |
TSS clone | T | clone | - | 8589706 | -35 |
TSS clone | A | clone | - | 8589700 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCTTCCTCCTCCTTC | - | 8589708 | 8589725 | -37 | -54 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAGTCAA | - | 8589820 | 8589827 | -149 | -156 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 10 | + | 8586440 | AT3G23805.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAAACCGACCGGTTTAA | + | 8586380 | 8586397 | AT3G23805.1 | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | TTAAACCG CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |