PlantPromoterDB promoter information of AT3G23820.1
Summary of Gene (AT3G23820.1)
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Overview
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Focused view (chromosome 3: 8601495-8602694)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G23820.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G23820.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 109 | + | 8603497 | -148 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 8603430 | -215 |
| TSS clone | A | clone | + | 8603497 | -148 |
| TSS clone | G | clone | + | 8603498 | -147 |
| TSS clone | A | clone | + | 8603557 | -88 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATAA | + | 8603459 | 8603467 | -186 | -178 |
| Y Patch | TTCTCTCTTCTTCTT | + | 8603448 | 8603462 | -197 | -183 |
| Y Patch | TCTCTCTC | + | 8603508 | 8603515 | -137 | -130 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAGGCCTAAT | + | 8603261 | 8603271 | -384 | -374 | |||
| AtREG649 | ATAGGCCT | PPDB Motif | PLACE Motif | ||||||
| AtREG506 | GGCCTAAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||