PlantPromoterDB promoter information of AT3G23920.1
Summary of Gene (AT3G23920.1)
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Overview
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Focused view (chromosome 3: 8640722-8641921)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G23920.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G23920.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | + | 8641623 | -99 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 8641569 | -153 |
| TSS clone | A | clone | + | 8641623 | -99 |
| TSS clone | A | clone | + | 8641627 | -95 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAATT | + | 8641579 | 8641586 | -143 | -136 |
| Y Patch | TCTTCTCTTCCTCCTTCTC | + | 8641588 | 8641606 | -134 | -116 |
| Y Patch | TCTCTCCTCC | + | 8641610 | 8641619 | -112 | -103 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAGCGCGT | + | 8641412 | 8641419 | -310 | -303 | |||
| AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | TTCACGCGCT | + | 8641431 | 8641440 | -291 | -282 | |||
| AtREG631 | TTCACGCG | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG395 | TCACGCGC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | CTTAACCG | + | 8641477 | 8641484 | -245 | -238 | |||
| AtREG605 | CTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | TACACGTGTCAC | + | 8641510 | 8641521 | -212 | -201 | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG498 | CGTGTCAC | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||