PlantPromoterDB promoter information of AT3G24093.1

Summary of Gene (AT3G24093.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G24093 TAIR NCBI
Gene model	AT3G24093.1
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22961.1); Has 15 Blast hits to 15 proteins in 8 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 8703310-8702111)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G24093.1 5'->3' (-) Promoter sequence AT3G24100.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G24093.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak C 4 + 8703276 AT3G24100.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`C`	4	+	8703276	AT3G24100.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 8703286 AT3G24100.1

TSS clone T clone + 8703288 AT3G24100.1

TSS clone T clone + 8703292 AT3G24100.1

TSS clone T clone + 8703295 AT3G24100.1

TSS clone C clone + 8703296 AT3G24100.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	8703286	AT3G24100.1
TSS clone	`T`	clone	+	8703288	AT3G24100.1
TSS clone	`T`	clone	+	8703292	AT3G24100.1
TSS clone	`T`	clone	+	8703295	AT3G24100.1
TSS clone	`C`	clone	+	8703296	AT3G24100.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTCCT + 8703283 8703292 AT3G24100.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTCCT`	+	8703283	8703292	AT3G24100.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCAAACCGGAT + 8703065 8703075 AT3G24100.1

AtREG550 CCAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG496 CAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG561    AACCGGAT PPDB Motif AACCG(G/A) PLACE Motif

REG AAACCGAA + 8703083 8703090 AT3G24100.1

AtREG568 AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG AAAACCGGAAA + 8703119 8703129 AT3G24100.1

AtREG542 AAAACCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 AAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534   AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644    ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG GTAAACCGAACC + 8703143 8703154 AT3G24100.1

AtREG519 GTAAACCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA    PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG556    AACCGAAC PPDB Motif AACCG(G/A) PLACE Motif

AtREG451     ACCGAACC PPDB Motif PLACE Motif