PlantPromoterDB promoter information of AT3G24120.2

Summary of Gene (AT3G24120.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G24120 TAIR NCBI
Gene model	AT3G24120.2
Description	myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: UNE16 (unfertilized embryo sac 16); transcription factor (TAIR:AT4G13640.2); Has 910 Blast hits to 901 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 8693398-8692199)

`Genome position from initiation codon` `AT3G24068.1 TSS from cDNA TSS information AT3G24120.2 5'->3' (-) Promoter sequence AT3G24070.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G24120.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 - 8708327 -179

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	-	8708327	-179

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 8708187 -39

TSS clone C clone - 8708176 -28

TSS clone G clone - 8708175 -27

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	8708187	-39
TSS clone	`C`	clone	-	8708176	-28
TSS clone	`G`	clone	-	8708175	-27

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TATAAACA - 8708350 8708357 -202 -209

Y Patch TTCCTTCT - 8708340 8708347 -192 -199

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TATAAACA`	-	8708350	8708357	-202	-209
Y Patch	`TTCCTTCT`	-	8708340	8708347	-192	-199
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CAATTGGG - 8708593 8708600 -445 -452

AtREG647 CAATTGGG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CAATTGGG`		-	8708593	8708600	-445	-452
	AtREG647	`CAATTGGG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 8693085 AT3G24070.1

TSS clone peak T clone + 8693086 AT3G24070.1

TSS clone G clone + 8693092 AT3G24070.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	8693085	AT3G24070.1
TSS clone peak	`T`	clone	+	8693086	AT3G24070.1
TSS clone	`G`	clone	+	8693092	AT3G24070.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TAAATATAAATATA + 8693057 8693070 AT3G24070.1

Y Patch TTTCTCTCCC + 8693105 8693114 AT3G24070.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TAAATATAAATATA`	+	8693057	8693070	AT3G24070.1
Y Patch	`TTTCTCTCCC`	+	8693105	8693114	AT3G24070.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCCATTAAAAGTCAA + 8692933 8692947 AT3G24070.1

AtREG396 CCCATTAA        PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG632        AAAGTCAA PPDB Motif PLACE Motif TTGAC

REG GTTTGGGCT + 8692954 8692962 AT3G24070.1

AtREG474 GTTTGGGC PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

REG GTTTGGGCTTTAGTAGGCCCAACT + 8692974 8692997 AT3G24070.1

AtREG474 GTTTGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT                PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA             PPDB Motif GCCCA PLACE Motif

AtREG435             GTAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358              TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356               AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG449                GGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

AtREG607                 GCCCAACT PPDB Motif GCCCA PLACE Motif

REG TTAATGGGC + 8693032 8693040 AT3G24070.1

AtREG396 TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357 TAATGGGC PPDB Motif GCCCA PLACE Motif