Summary of Gene (AT3G24120.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G24120.2 5'->3' (-) Promoter sequence AT3G24070.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | - | 8708327 | -179 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 8708187 | -39 |
TSS clone | C | clone | - | 8708176 | -28 |
TSS clone | G | clone | - | 8708175 | -27 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATAAACA | - | 8708350 | 8708357 | -202 | -209 |
Y Patch | TTCCTTCT | - | 8708340 | 8708347 | -192 | -199 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAATTGGG | - | 8708593 | 8708600 | -445 | -452 | |||
AtREG647 | CAATTGGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 8693085 | AT3G24070.1 |
TSS clone peak | T | clone | + | 8693086 | AT3G24070.1 |
TSS clone | G | clone | + | 8693092 | AT3G24070.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TAAATATAAATATA | + | 8693057 | 8693070 | AT3G24070.1 | |
Y Patch | TTTCTCTCCC | + | 8693105 | 8693114 | AT3G24070.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAATGGGC | + | 8693032 | 8693040 | AT3G24070.1 | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   |