Summary of Gene (AT3G24120.2)
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Overview |
Genome position
from initiation codon AT3G24080.2 TSS from cDNA TSS information AT3G24120.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | - | 8708327 | -179 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 8708187 | -39 |
TSS clone | C | clone | - | 8708176 | -28 |
TSS clone | G | clone | - | 8708175 | -27 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATAAACA | - | 8708350 | 8708357 | -202 | -209 |
Y Patch | TTCCTTCT | - | 8708340 | 8708347 | -192 | -199 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAATTGGG | - | 8708593 | 8708600 | -445 | -452 | |||
AtREG647 | CAATTGGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 21 | - | 8697124 | AT3G24080.1, AT3G24080.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 8697124 | AT3G24080.1, AT3G24080.2 |
TSS clone | C | clone | - | 8697123 | AT3G24080.1, AT3G24080.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTATAAATA | - | 8697152 | 8697160 | AT3G24080.1, AT3G24080.2 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |