PlantPromoterDB promoter information of AT3G24120.2
Summary of Gene (AT3G24120.2)
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Overview
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Focused view (chromosome 3: 8703198-8701999)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G24120.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G24120.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | - | 8708327 | -179 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 8708187 | -39 |
| TSS clone | C | clone | - | 8708176 | -28 |
| TSS clone | G | clone | - | 8708175 | -27 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAACA | - | 8708350 | 8708357 | -202 | -209 |
| Y Patch | TTCCTTCT | - | 8708340 | 8708347 | -192 | -199 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAATTGGG | - | 8708593 | 8708600 | -445 | -452 | |||
| AtREG647 | CAATTGGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCAAACCGGAT | + | 8703065 | 8703075 | AT3G24100.1 | ||||
| AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAACCGAA | + | 8703083 | 8703090 | AT3G24100.1 | ||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAACCGGAAA | + | 8703119 | 8703129 | AT3G24100.1 | ||||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTAAACCGAACC | + | 8703143 | 8703154 | AT3G24100.1 | ||||
| AtREG519 | GTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||