PlantPromoterDB promoter information of AT3G24120.2

Summary of Gene (AT3G24120.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G24120 TAIR NCBI
Gene model	AT3G24120.2
Description	myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: UNE16 (unfertilized embryo sac 16); transcription factor (TAIR:AT4G13640.2); Has 910 Blast hits to 901 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 8703398-8702199)

`Genome position from initiation codon` `AT3G24093.1 TSS from cDNA TSS information AT3G24120.2 5'->3' (-) Promoter sequence AT3G24100.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G24120.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 5 - 8708327 -179

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	5	-	8708327	-179

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 8708187 -39

TSS clone C clone - 8708176 -28

TSS clone G clone - 8708175 -27

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	8708187	-39
TSS clone	`C`	clone	-	8708176	-28
TSS clone	`G`	clone	-	8708175	-27

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TATAAACA - 8708350 8708357 -202 -209

Y Patch TTCCTTCT - 8708340 8708347 -192 -199

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TATAAACA`	-	8708350	8708357	-202	-209
Y Patch	`TTCCTTCT`	-	8708340	8708347	-192	-199
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CAATTGGG - 8708593 8708600 -445 -452

AtREG647 CAATTGGG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CAATTGGG`		-	8708593	8708600	-445	-452
	AtREG647	`CAATTGGG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak C 4 + 8703276 AT3G24100.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`C`	4	+	8703276	AT3G24100.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 8703286 AT3G24100.1

TSS clone T clone + 8703288 AT3G24100.1

TSS clone T clone + 8703292 AT3G24100.1

TSS clone T clone + 8703295 AT3G24100.1

TSS clone C clone + 8703296 AT3G24100.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	8703286	AT3G24100.1
TSS clone	`T`	clone	+	8703288	AT3G24100.1
TSS clone	`T`	clone	+	8703292	AT3G24100.1
TSS clone	`T`	clone	+	8703295	AT3G24100.1
TSS clone	`C`	clone	+	8703296	AT3G24100.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTCCT + 8703283 8703292 AT3G24100.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTCCT`	+	8703283	8703292	AT3G24100.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCAAACCGGAT + 8703065 8703075 AT3G24100.1

AtREG550 CCAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG496 CAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG561    AACCGGAT PPDB Motif AACCG(G/A) PLACE Motif

REG AAACCGAA + 8703083 8703090 AT3G24100.1

AtREG568 AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG AAAACCGGAAA + 8703119 8703129 AT3G24100.1

AtREG542 AAAACCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 AAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534   AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644    ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG GTAAACCGAACC + 8703143 8703154 AT3G24100.1

AtREG519 GTAAACCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA    PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG556    AACCGAAC PPDB Motif AACCG(G/A) PLACE Motif

AtREG451     ACCGAACC PPDB Motif PLACE Motif