PlantPromoterDB promoter information of AT3G24160.1
Summary of Gene (AT3G24160.1)
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Overview
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Focused view (chromosome 3: 8725241-8726440)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G24160.1 5'->3' (+) Promoter sequence AT3G24150.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G24160.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 26 | + | 8726123 | -118 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 8726124 | -117 |
| TSS clone | C | clone | + | 8726168 | -73 |
| TSS clone | T | clone | + | 8726170 | -71 |
| TSS clone | A | clone | + | 8726176 | -65 |
| TSS clone | T | clone | + | 8726177 | -64 |
| TSS clone | T | clone | + | 8726202 | -39 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCC | + | 8726161 | 8726168 | -80 | -73 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTCGTTTT | + | 8726000 | 8726008 | -241 | -233 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | TGTCGTTTA | + | 8726031 | 8726039 | -210 | -202 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG565 | GTCGTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | GGCTTTTT | + | 8726044 | 8726051 | -197 | -190 | |||
| AtREG589 | GGCTTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | CTAAACCGGAA | + | 8726053 | 8726063 | -188 | -178 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATAACCGGGTT | + | 8726069 | 8726079 | -172 | -162 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG516 | ACCGGGTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 8725912 | AT3G24150.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAACGACA | - | 8726000 | 8726008 | AT3G24150.1 | ||||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| REG | TAAACGACA | - | 8726031 | 8726039 | AT3G24150.1 | ||||
| AtREG565 | TAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| REG | AAAAAGCC | - | 8726044 | 8726051 | AT3G24150.1 | ||||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | TTCCGGTTTAG | - | 8726053 | 8726063 | AT3G24150.1 | ||||
| AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACCCGGTTAT | - | 8726069 | 8726079 | AT3G24150.1 | ||||
| AtREG516 | AACCCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG455 | ACCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | GGTGTCGTTT | - | 8726102 | 8726111 | AT3G24150.1 | ||||
| AtREG599 | GGTGTCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||