PlantPromoterDB promoter information of AT3G24315.1
Summary of Gene (AT3G24315.1)
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Overview
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Focused view (chromosome 3: 8823445-8822246)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G24315.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G24315.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 8822790 | -345 |
| TSS clone peak | G | clone | - | 8822754 | -309 |
| TSS clone | G | clone | - | 8822753 | -308 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTC | - | 8822737 | 8822744 | -292 | -299 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTCGTTTT | - | 8822832 | 8822841 | -387 | -396 | |||
| AtREG493 | ACGTCGTT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | ATAACCGGGTT | - | 8822869 | 8822879 | -424 | -434 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG516 | ACCGGGTT | PPDB Motif | PLACE Motif | ||||||
| REG | ATAAACCGGAC | - | 8822910 | 8822920 | -465 | -475 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCAATAAG | - | 8822947 | 8822954 | -502 | -509 | |||
| AtREG611 | CCAATAAG | PPDB Motif | PLACE Motif | ||||||
| REG | ACGTGTAC | - | 8823016 | 8823023 | -571 | -578 | |||
| AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | TGTCGTTTC | - | 8823037 | 8823045 | -592 | -600 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||