PlantPromoterDB promoter information of AT3G25920.1
Summary of Gene (AT3G25920.1)
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Overview
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Focused view (chromosome 3: 9493558-9492359)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G25920.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G25920.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 4 | - | 9492585 | -27 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 9492634 | -76 |
| TSS clone | T | clone | - | 9492615 | -57 |
| TSS clone | A | clone | - | 9492603 | -45 |
| TSS clone | C | clone | - | 9492601 | -43 |
| TSS clone | T | clone | - | 9492598 | -40 |
| TSS clone | T | clone | - | 9492596 | -38 |
| TSS clone | G | clone | - | 9492583 | -25 |
| TSS clone | T | clone | - | 9492582 | -24 |
| TSS clone | T | clone | - | 9492577 | -19 |
| TSS clone | T | clone | - | 9492573 | -15 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCCTC | - | 9492604 | 9492611 | -46 | -53 |
| Y Patch | TCTCTCTCT | - | 9492617 | 9492625 | -59 | -67 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGATGTCGTTTA | - | 9492651 | 9492662 | -93 | -104 | |||
| AtREG630 | CGATGTCG | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG565 | GTCGTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | AAAGGCCCAATAA | - | 9492685 | 9492697 | -127 | -139 | |||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG417 | CCCAATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAAGGCCTAAA | - | 9492707 | 9492718 | -149 | -160 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||