PlantPromoterDB promoter information of AT3G26030.1
Summary of Gene (AT3G26030.1)
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Overview
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Focused view (chromosome 3: 9516741-9517940)
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Genome position
from initiation codon AT3G26020.2 AT3G26020.3 AT3G26020.4 TSS from cDNA TSS information AT3G26030.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G26030.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | + | 9517227 | -514 |
| TSS peak | A | 2 | + | 9517343 | -398 |
| TSS peak | A | 4 | + | 9517637 | -104 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 9517261 | -480 |
| TSS clone | A | clone | + | 9517313 | -428 |
| TSS clone | A | clone | + | 9517343 | -398 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCTC | + | 9517231 | 9517239 | -510 | -502 |
| Y Patch | TCCTCTCTTTCT | + | 9517248 | 9517259 | -493 | -482 |
| Y Patch | TCTCTCTCTCTCTTT | + | 9517261 | 9517275 | -480 | -466 |
| Y Patch | TTCTCTCTCTTCTTCTCT | + | 9517295 | 9517312 | -446 | -429 |
| Y Patch | TTCCTTCTTCTTCTTCTTCTTCTTCTTCTTC | + | 9517350 | 9517380 | -391 | -361 |
| Y Patch | CTTTCTTC | + | 9517650 | 9517657 | -91 | -84 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGGTTTAG | + | 9517117 | 9517125 | -624 | -616 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTTGACCC | + | 9517401 | 9517408 | -340 | -333 | |||
| AtREG592 | TTTGACCC | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | TTCACGCGCTT | + | 9517468 | 9517478 | -273 | -263 | |||
| AtREG631 | TTCACGCG | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG395 | TCACGCGC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||