PlantPromoterDB promoter information of AT3G26340.1

Summary of Gene (AT3G26340.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G26340 TAIR NCBI
Gene model	AT3G26340.1
Description	20S proteasome beta subunit E, putative; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBE1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G13060.1); Has 4428 Blast hits to 4424 proteins in 409 species: Archae - 476; Bacteria - 181; Metazoa - 1589; Fungi - 914; Plants - 555; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 9653572-9652373)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G26340.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G26340.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 4 - 9652896 -324

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	4	-	9652896	-324

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 9652896 -324

TSS clone A clone - 9652852 -280

TSS clone A clone - 9652842 -270

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	9652896	-324
TSS clone	`A`	clone	-	9652852	-280
TSS clone	`A`	clone	-	9652842	-270

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTCTT - 9652860 9652867 -288 -295

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTCTT`	-	9652860	9652867	-288	-295
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AACCCGACCCG - 9652936 9652946 -364 -374

AtREG580 AACCCGAC    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405 ACCCGACC   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442   CCCGACCC PPDB Motif CCGAC PLACE Motif CCGAC

AtREG375    CCGACCCG PPDB Motif CCGAC PLACE Motif CCGAC

REG TGACCCGAA - 9652954 9652962 -382 -390

AtREG617 TGACCCGA PPDB Motif PLACE Motif

AtREG597 GACCCGAA PPDB Motif GGGACCC PLACE Motif

REG ATGGCCCATGAAGCCCAACA - 9652999 9653018 -427 -446

AtREG437 ATGGCCCA             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490 TGGCCCAT            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG504   GGCCCATG           PPDB Motif GCCCA, CCATGG PLACE Motif GGGCC, TGGGCY

AtREG476          GAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407           AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG574            AGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif TGGGCY

AtREG543             GCCCAACA PPDB Motif GCCCA PLACE Motif CAACA

REG AAAAGGCC - 9653023 9653030 -451 -458

AtREG459 AAAAGGCC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AACCCGACCCG`		-	9652936	9652946	-364	-374
	AtREG580	`AACCCGAC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG405	`ACCCGACC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`CCCGACCC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG375	`CCGACCCG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
REG	`TGACCCGAA`		-	9652954	9652962	-382	-390
	AtREG617	`TGACCCGA`		PPDB Motif		PLACE Motif
	AtREG597	`GACCCGAA`		PPDB Motif	`GGGACCC`	PLACE Motif
REG	`ATGGCCCATGAAGCCCAACA`		-	9652999	9653018	-427	-446
	AtREG437	`ATGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`TGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG504	`GGCCCATG`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG476	`GAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG574	`AGCCCAAC`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`TGGGCY`
	AtREG543	`GCCCAACA`		PPDB Motif	`GCCCA`	PLACE Motif	`CAACA`
REG	`AAAAGGCC`		-	9653023	9653030	-451	-458
	AtREG459	`AAAAGGCC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None