PlantPromoterDB promoter information of AT3G26400.1
Summary of Gene (AT3G26400.1)
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Overview
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Focused view (chromosome 3: 9665616-9666815)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G26400.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G26400.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | + | 9665630 | -986 |
| TSS peak | T | 4 | + | 9665824 | -792 |
| TSS peak | A | 13 | + | 9666488 | -128 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCTCTCTTCTCTT | + | 9665608 | 9665625 | -1008 | -991 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTCCGGT | + | 9665677 | 9665684 | -939 | -932 | |||
| AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCGGTTTAC | + | 9665749 | 9665757 | -867 | -859 | |||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAGTCAACACGTGTT | + | 9666193 | 9666208 | -423 | -408 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| AtREG590 | AACACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | CTAATGGGCTATTGTTGGGCTC | + | 9666257 | 9666278 | -359 | -338 | |||
| AtREG558 | CTAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG581 | ATGGGCTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG584 | GGGCTATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG543 | TGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| AtREG533 | TTGGGCTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GGCTTTAA | + | 9666306 | 9666313 | -310 | -303 | |||
| AtREG545 | GGCTTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | AGCGCGTGA | + | 9666377 | 9666385 | -239 | -231 | |||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||