PlantPromoterDB promoter information of AT3G26740
Summary of Gene (AT3G26740)
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Overview
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Focused view (chromosome 3: 9826868-9828067)
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Genome position
from initiation codon AT3G26740.1 TSS from cDNA TSS information AT3G26740 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G26740
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 24 | + | 9827815 | -53 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 9827802 | -66 |
| TSS clone | G | clone | + | 9827803 | -65 |
| TSS clone | A | clone | + | 9827804 | -64 |
| TSS clone | A | clone | + | 9827805 | -63 |
| TSS clone | C | clone | + | 9827806 | -62 |
| TSS clone | A | clone | + | 9827808 | -60 |
| TSS clone | A | clone | + | 9827810 | -58 |
| TSS clone | A | clone | + | 9827811 | -57 |
| TSS clone | A | clone | + | 9827815 | -53 |
| TSS clone | T | clone | + | 9827816 | -52 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTATAAATA | + | 9827771 | 9827779 | -97 | -89 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTTGGAT | + | 9827660 | 9827668 | -208 | -200 | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||