PlantPromoterDB promoter information of AT3G27160.1
Summary of Gene (AT3G27160.1)
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Overview
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Focused view (chromosome 3: 10016531-10017730)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G27160.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G27160.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 61 | + | 10017476 | -55 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 10017476 | -55 |
| TSS clone | A | clone | + | 10017477 | -54 |
| TSS clone | A | clone | + | 10017482 | -49 |
| TSS clone | T | clone | + | 10017485 | -46 |
| TSS clone | T | clone | + | 10017487 | -44 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCC | + | 10017483 | 10017490 | -48 | -41 |
| Y Patch | TTCTCTTCTTCTTCTTCTTCTTCCTC | + | 10017494 | 10017519 | -37 | -12 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAATGGGCCTTAT | + | 10017316 | 10017329 | -215 | -202 | |||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TAGCCCATAT | + | 10017340 | 10017349 | -191 | -182 | |||
| AtREG581 | TAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG477 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG432 | GCCCATAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCATTTA | + | 10017359 | 10017366 | -172 | -165 | |||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTAAACCGGGTT | + | 10017401 | 10017412 | -130 | -119 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG516 | ACCGGGTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||