PlantPromoterDB promoter information of AT3G27380.2
Summary of Gene (AT3G27380.2)
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Overview
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Focused view (chromosome 3: 10133673-10132474)
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Genome position
from initiation codon AT3G27390.1 TSS from cDNA TSS information AT3G27380.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G27380.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 54 | - | 10132693 | -20 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 10132725 | -52 |
| TSS clone | C | clone | - | 10132694 | -21 |
| TSS clone | A | clone | - | 10132693 | -20 |
| TSS clone | G | clone | - | 10132692 | -19 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATAAATA | - | 10132720 | 10132729 | -47 | -56 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAGTCGG | - | 10132937 | 10132944 | -264 | -271 | |||
| AtREG582 | TAAGTCGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | TCGCCACG | - | 10132953 | 10132960 | -280 | -287 | |||
| AtREG471 | TCGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | CACGCGCC | - | 10132982 | 10132989 | -309 | -316 | |||
| AtREG486 | CACGCGCC | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||