PlantPromoterDB promoter information of AT3G27850
Summary of Gene (AT3G27850)
|
Overview
|
Focused view (chromosome 3: 10323905-10325104)
|
Genome position
from initiation codon AT3G27845 AT3G27845.1 AT3G27850.1 TSS from cDNA TSS information AT3G27850 5'->3' (+) Promoter sequence AT3G27845.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G27850
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 249 | + | 10324843 | -62 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 10324840 | -65 |
| TSS clone | C | clone | + | 10324844 | -61 |
| TSS clone | C | clone | + | 10324854 | -51 |
| TSS clone | A | clone | + | 10324861 | -44 |
| TSS clone | C | clone | + | 10324865 | -40 |
| TSS clone | A | clone | + | 10324867 | -38 |
| TSS clone | A | clone | + | 10324868 | -37 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCCTC | + | 10324816 | 10324823 | -89 | -82 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTATTGGGTCAAA | + | 10324598 | 10324610 | -307 | -295 | |||
| AtREG624 | CTATTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | ACACGCGC | + | 10324745 | 10324752 | -160 | -153 | |||
| AtREG385 | ACACGCGC | PPDB Motif | ACGCGC | PLACE Motif | ACACNNG | ||||
| REG | AAATACCCCTTA | + | 10324789 | 10324800 | -116 | -105 | |||
| AtREG602 | AAATACCC | PPDB Motif | PLACE Motif | ||||||
| AtREG614 | AATACCCC | PPDB Motif | ACCCCT | PLACE Motif | |||||
| AtREG636 | ACCCCTTA | PPDB Motif | ACCCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||