PlantPromoterDB promoter information of AT3G42790.1
Summary of Gene (AT3G42790.1)
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Overview
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Focused view (chromosome 3: 14880618-14879419)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G42790.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G42790.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | - | 14879667 | -49 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 14879735 | -117 |
| TSS clone | C | clone | - | 14879712 | -94 |
| TSS clone | C | clone | - | 14879707 | -89 |
| TSS clone | C | clone | - | 14879673 | -55 |
| TSS clone | C | clone | - | 14879672 | -54 |
| TSS clone | C | clone | - | 14879671 | -53 |
| TSS clone | T | clone | - | 14879668 | -50 |
| TSS clone | C | clone | - | 14879652 | -34 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTCT | - | 14879654 | 14879661 | -36 | -43 |
| Y Patch | TTCCCTCT | - | 14879668 | 14879675 | -50 | -57 |
| Y Patch | CGTCTTCTTC | - | 14879686 | 14879695 | -68 | -77 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGACCCGACCCGAACCA | - | 14879791 | 14879807 | -173 | -189 | |||
| AtREG617 | TGACCCGA | PPDB Motif | PLACE Motif | ||||||
| AtREG390 | GACCCGAC | PPDB Motif | CCGAC, GGGACCC | PLACE Motif | CCGAC | ||||
| AtREG405 | ACCCGACC | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG442 | CCCGACCC | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG375 | CCGACCCG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG383 | CGACCCGA | PPDB Motif | PLACE Motif | ||||||
| AtREG597 | GACCCGAA | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG655 | CCGAACCA | PPDB Motif | PLACE Motif | ||||||
| REG | ATTTGGGCTTTTGGGCTTC | - | 14879825 | 14879843 | -207 | -225 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG469 | TTTGGGCTTTTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTTTTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG529 | TTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG476 | TGGGCTTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||