PlantPromoterDB promoter information of AT3G44340.1
Summary of Gene (AT3G44340.1)
|
Overview
|
Focused view (chromosome 3: 16020873-16019674)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G44340.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G44340.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | - | 16020243 | -370 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 16020239 | -366 |
| TSS clone | T | clone | - | 16020238 | -365 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATTATATA | - | 16020280 | 16020287 | -407 | -414 |
| Y Patch | TCTCCTTCT | - | 16020210 | 16020218 | -337 | -345 |
| Y Patch | CTTCTTCTCCTTCCTC | - | 16020244 | 16020259 | -371 | -386 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAAACGCG | - | 16020293 | 16020301 | -420 | -428 | |||
| AtREG564 | TAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | ATAACCGGAT | - | 16020352 | 16020361 | -479 | -488 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG621 | TAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTCCGGTTC | - | 16020366 | 16020374 | -493 | -501 | |||
| AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GAACCGGAC | - | 16020402 | 16020410 | -529 | -537 | |||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACCGAACTTAAACCGAAC | - | 16020422 | 16020440 | -549 | -567 | |||
| AtREG556 | AACCGAAC AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||