PlantPromoterDB promoter information of AT3G44990.1
Summary of Gene (AT3G44990.1)
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Overview
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Focused view (chromosome 3: 16449678-16448479)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G44990.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G44990.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 42 | - | 16448764 | -86 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 16448764 | -86 |
| TSS clone | T | clone | - | 16448763 | -85 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTT | - | 16448737 | 16448744 | -59 | -66 |
| Y Patch | CCTTCTCTC | - | 16448775 | 16448783 | -97 | -105 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGACCCG | - | 16448810 | 16448817 | -132 | -139 | |||
| AtREG491 | CGGACCCG | PPDB Motif | PLACE Motif | ||||||
| REG | AGAGGCCCATC | - | 16448855 | 16448865 | -177 | -187 | |||
| AtREG411 | AGAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG447 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG403 | GGCCCATC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||