PlantPromoterDB promoter information of AT3G45280
Summary of Gene (AT3G45280)
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Overview
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Focused view (chromosome 3: 16614304-16613105)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G45280 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G45280
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 2 | - | 16613351 | -47 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGCCGTTTA | - | 16613418 | 16613426 | -114 | -122 | |||
| AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CAAGCCCACTA | - | 16613558 | 16613568 | -254 | -264 | |||
| AtREG525 | CAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG518 | AAGCCCAC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG510 | AGCCCACT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG532 | GCCCACTA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||