PlantPromoterDB promoter information of AT3G47340

Summary of Gene (AT3G47340)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G47340 TAIR NCBI
Gene model	AT3G47340
Description	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.

#

Overview

Focused view (chromosome 3: 17442043-17440844)

`Genome position from initiation codon` `AT3G47340.1 AT3G47340.2 AT3G47340.3 TSS from cDNA TSS information AT3G47340 5'->3' (-) Promoter sequence AT3G47341.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G47340

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 17441310 -267

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	17441310	-267

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 17441243 -200

TSS clone A clone - 17441241 -198

TSS clone C clone - 17441240 -197

TSS clone A clone - 17441239 -196

TSS clone T clone - 17441238 -195

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	17441243	-200
TSS clone	`A`	clone	-	17441241	-198
TSS clone	`C`	clone	-	17441240	-197
TSS clone	`A`	clone	-	17441239	-196
TSS clone	`T`	clone	-	17441238	-195

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATCCGGTTA - 17441350 17441358 -307 -315

AtREG561 ATCCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG621 TCCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG AACACGTGGAA - 17441387 17441397 -344 -354

AtREG590 AACACGTG    ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG382 ACACGTGG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG408   CACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG627    ACGTGGAA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG GACGTCGT - 17441411 17441418 -368 -375

AtREG431 GACGTCGT PPDB Motif ACGT PLACE Motif ACGT

REG AAACCGGAC - 17441457 17441465 -414 -422

AtREG521 AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG573 AACCGGAC PPDB Motif AACCG(G/A) PLACE Motif

REG CTAAACCGGAA - 17441492 17441502 -449 -459

AtREG511 CTAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

REG ACCGTCAGA - 17441541 17441549 -498 -506

AtREG625 ACCGTCAG PPDB Motif PLACE Motif

AtREG622 CCGTCAGA PPDB Motif PLACE Motif

REG AACACGTGTAC - 17441590 17441600 -547 -557

AtREG590 AACACGTG    ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG453   CACGTGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACACNNG

AtREG562    ACGTGTAC ABA, Auxin PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATCCGGTTA`		-	17441350	17441358	-307	-315
	AtREG561	`ATCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG621	`TCCGGTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`AACACGTGGAA`		-	17441387	17441397	-344	-354
	AtREG590	`AACACGTG`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG382	`ACACGTGG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG408	`CACGTGGA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG627	`ACGTGGAA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`GACGTCGT`		-	17441411	17441418	-368	-375
	AtREG431	`GACGTCGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`AAACCGGAC`		-	17441457	17441465	-414	-422
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG573	`AACCGGAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTAAACCGGAA`		-	17441492	17441502	-449	-459
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ACCGTCAGA`		-	17441541	17441549	-498	-506
	AtREG625	`ACCGTCAG`		PPDB Motif		PLACE Motif
	AtREG622	`CCGTCAGA`		PPDB Motif		PLACE Motif
REG	`AACACGTGTAC`		-	17441590	17441600	-547	-557
	AtREG590	`AACACGTG`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG453	`CACGTGTA`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACACNNG`
	AtREG562	`ACGTGTAC`	ABA, Auxin	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None