PlantPromoterDB promoter information of AT3G47470
Summary of Gene (AT3G47470)
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Overview
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Focused view (chromosome 3: 17495773-17494574)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G47470 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G47470
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 294 | - | 17494850 | -77 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 17494956 | -183 |
| TSS clone | C | clone | - | 17494903 | -130 |
| TSS clone | A | clone | - | 17494889 | -116 |
| TSS clone | A | clone | - | 17494883 | -110 |
| TSS clone | T | clone | - | 17494882 | -109 |
| TSS clone | T | clone | - | 17494878 | -105 |
| TSS clone | A | clone | - | 17494875 | -102 |
| TSS clone | C | clone | - | 17494874 | -101 |
| TSS clone | A | clone | - | 17494873 | -100 |
| TSS clone | A | clone | - | 17494872 | -99 |
| TSS clone | C | clone | - | 17494871 | -98 |
| TSS clone | A | clone | - | 17494869 | -96 |
| TSS clone | T | clone | - | 17494868 | -95 |
| TSS clone | T | clone | - | 17494866 | -93 |
| TSS clone | T | clone | - | 17494859 | -86 |
| TSS clone | T | clone | - | 17494856 | -83 |
| TSS clone | A | clone | - | 17494850 | -77 |
| TSS clone | A | clone | - | 17494849 | -76 |
| TSS clone | C | clone | - | 17494847 | -74 |
| TSS clone | T | clone | - | 17494846 | -73 |
| TSS clone | C | clone | - | 17494845 | -72 |
| TSS clone | T | clone | - | 17494844 | -71 |
| TSS clone | T | clone | - | 17494842 | -69 |
| TSS clone | G | clone | - | 17494840 | -67 |
| TSS clone | A | clone | - | 17494834 | -61 |
| TSS clone | G | clone | - | 17494817 | -44 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTTC | - | 17494820 | 17494828 | -47 | -55 |
| Y Patch | TCTCTCTT | - | 17494841 | 17494848 | -68 | -75 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCAACGG | - | 17494963 | 17494971 | -190 | -198 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | CCACGTCATC | - | 17494974 | 17494983 | -201 | -210 | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | ATAAACCGA | - | 17495028 | 17495036 | -255 | -263 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GACCCGAC | - | 17495097 | 17495104 | -324 | -331 | |||
| AtREG390 | GACCCGAC | PPDB Motif | CCGAC, GGGACCC | PLACE Motif | CCGAC | ||||
| REG | TGACACGTGTA | - | 17495114 | 17495124 | -341 | -351 | |||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||