PlantPromoterDB promoter information of AT3G48090
Summary of Gene (AT3G48090)
|
Overview
|
Focused view (chromosome 3: 17761742-17760543)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G48090 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G48090
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 8 | - | 17757453 | 239 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 17757757 | -65 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 18 | - | 17760809 | AT3G48100.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 17760809 | AT3G48100.1 |
| TSS clone | G | clone | - | 17760808 | AT3G48100.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTTATAAATC | - | 17760833 | 17760844 | AT3G48100.1 | |
| Y Patch | TCTCTCTC | - | 17760768 | 17760775 | AT3G48100.1 | |
| Y Patch | TTCTCTCT | - | 17760777 | 17760784 | AT3G48100.1 | |
| Y Patch | TTCTCCTCTCATCTCTC | - | 17760810 | 17760826 | AT3G48100.1 | |
| Y Patch | TCTCCTTCTTTCTTCCT | - | 17760842 | 17760858 | AT3G48100.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CACGCGCT | - | 17760936 | 17760943 | AT3G48100.1 | ||||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||