Summary of Gene (AT3G48090)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G48090 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 8 | - | 17757453 | 239 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 17757757 | -65 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 18 | - | 17760809 | AT3G48100.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 17760809 | AT3G48100.1 |
TSS clone | G | clone | - | 17760808 | AT3G48100.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTTTATAAATC | - | 17760833 | 17760844 | AT3G48100.1 | |
Y Patch | TTCTCCTCTCATCTCTC | - | 17760810 | 17760826 | AT3G48100.1 | |
Y Patch | TCTCCTTCTTTCTTCCT | - | 17760842 | 17760858 | AT3G48100.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CACGCGCT | - | 17760936 | 17760943 | AT3G48100.1 | ||||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   |