PlantPromoterDB promoter information of AT3G48130.1
Summary of Gene (AT3G48130.1)
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Overview
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Focused view (chromosome 3: 17779528-17778329)
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Genome position
TSS from cDNA TSS information AT3G48130.1 5'->3' (-) Promoter sequence AT3G48140.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G48130.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 10 | + | 17778401 | AT3G48140.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | + | 17778391 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778395 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778397 | AT3G48140.1 |
| TSS clone | A | clone | + | 17778400 | AT3G48140.1 |
| TSS clone | A | clone | + | 17778401 | AT3G48140.1 |
| TSS clone | C | clone | + | 17778402 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778404 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778405 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778407 | AT3G48140.1 |
| TSS clone | A | clone | + | 17778409 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778419 | AT3G48140.1 |
| TSS clone | T | clone | + | 17778454 | AT3G48140.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TAAATATAAAG | + | 17778366 | 17778376 | AT3G48140.1 | |
| Y Patch | CGTCTTCTTCCTCCTTC | + | 17778417 | 17778433 | AT3G48140.1 | |
| Y Patch | TCTCTCTC | + | 17778436 | 17778443 | AT3G48140.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||