Summary of Gene (AT3G48140)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G48140 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | + | 17778401 | -70 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 17778391 | -80 |
TSS clone | T | clone | + | 17778395 | -76 |
TSS clone | T | clone | + | 17778397 | -74 |
TSS clone | A | clone | + | 17778400 | -71 |
TSS clone | A | clone | + | 17778401 | -70 |
TSS clone | C | clone | + | 17778402 | -69 |
TSS clone | T | clone | + | 17778404 | -67 |
TSS clone | T | clone | + | 17778405 | -66 |
TSS clone | T | clone | + | 17778407 | -64 |
TSS clone | A | clone | + | 17778409 | -62 |
TSS clone | T | clone | + | 17778419 | -52 |
TSS clone | T | clone | + | 17778454 | -17 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TAAATATAAAG | + | 17778366 | 17778376 | -105 | -95 |
Y Patch | CGTCTTCTTCCTCCTTC | + | 17778417 | 17778433 | -54 | -38 |
Y Patch | TCTCTCTC | + | 17778436 | 17778443 | -35 | -28 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TATATGGG | + | 17778131 | 17778138 | -340 | -333 | |||
AtREG620 | TATATGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTACCCCT | - | 17793807 | 17793814 | AT3G48185.1 | ||||
AtREG642 | TTACCCCT | PPDB Motif | ACCCCT  | PLACE Motif |   |