PlantPromoterDB promoter information of AT3G49680.2
Summary of Gene (AT3G49680.2)
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Overview
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Focused view (chromosome 3: 18421768-18422967)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G49680.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G49680.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | + | 18422676 | -92 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 18422650 | -118 |
| TSS clone | T | clone | + | 18422655 | -113 |
| TSS clone | G | clone | + | 18422676 | -92 |
| TSS clone | A | clone | + | 18422677 | -91 |
| TSS clone | A | clone | + | 18422678 | -90 |
| TSS clone | C | clone | + | 18422683 | -85 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCGTTTC | + | 18422422 | 18422429 | -346 | -339 | |||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
| REG | TGTTGGGCT | + | 18422525 | 18422533 | -243 | -235 | |||
| AtREG543 | TGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| REG | TGTTGGGCT | + | 18422549 | 18422557 | -219 | -211 | |||
| AtREG543 | TGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| REG | AACACGTGTT | + | 18422596 | 18422605 | -172 | -163 | |||
| AtREG590 | AACACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||