Summary of Gene (AT3G49780)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G49780 5'->3' (+) Promoter sequence AT3G49770.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 20 | + | 18465679 | -71 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 18465679 | -71 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CACTATAAATT | + | 18465642 | 18465652 | -108 | -98 |
Y Patch | TCTCTCTTCTC | + | 18465703 | 18465713 | -47 | -37 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGCCGTA | + | 18465432 | 18465439 | -318 | -311 | |||
AtREG499 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAACCGAA | - | 18462543 | 18462550 | AT3G49770.1 | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ACCGTCAG | - | 18462565 | 18462572 | AT3G49770.1 | ||||
AtREG625 | ACCGTCAG | PPDB Motif |   | PLACE Motif |   |