PlantPromoterDB promoter information of AT3G49780
Summary of Gene (AT3G49780)
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Overview
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Focused view (chromosome 3: 18472600-18473799)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G49780 5'->3' (+) Promoter sequence AT3G49800.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G49780
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 20 | + | 18465679 | -71 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 18465679 | -71 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATAAATT | + | 18465642 | 18465652 | -108 | -98 |
| Y Patch | TCTCTCTTCTC | + | 18465703 | 18465713 | -47 | -37 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGCCGTA | + | 18465432 | 18465439 | -318 | -311 | |||
| AtREG499 | GGGCCGTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 4 | - | 18473726 | AT3G49800.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 18473726 | AT3G49800.1 |
| TSS clone | C | clone | - | 18473725 | AT3G49800.1 |
| TSS clone | G | clone | - | 18473704 | AT3G49800.1 |
| TSS clone | A | clone | - | 18473701 | AT3G49800.1 |
| TSS clone | T | clone | - | 18473694 | AT3G49800.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GACGACGT | - | 18473773 | 18473780 | AT3G49800.1 | ||||
| AtREG526 | GACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||