PlantPromoterDB promoter information of AT3G49870.1
Summary of Gene (AT3G49870.1)
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Overview
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Focused view (chromosome 3: 18489421-18488222)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G49870.1 5'->3' (-) Promoter sequence AT3G49845.1
AT3G49850.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G49870.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 33 | - | 18494133 | -112 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 18494139 | -118 |
| TSS clone | T | clone | - | 18494128 | -107 |
| TSS clone | T | clone | - | 18494125 | -104 |
| TSS clone | A | clone | - | 18494122 | -101 |
| TSS clone | A | clone | - | 18494092 | -71 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCACGCGCTT | - | 18494394 | 18494403 | -373 | -382 | |||
| AtREG395 | TCACGCGC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | + | 18489060 | AT3G49850.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 18489049 | AT3G49850.1 |
| TSS clone | T | clone | + | 18489050 | AT3G49850.1 |
| TSS clone | G | clone | + | 18489052 | AT3G49850.1 |
| TSS clone | A | clone | + | 18489061 | AT3G49850.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCTTCCTCT | + | 18489078 | 18489091 | AT3G49850.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||