Summary of Gene (AT3G50500)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G50500 5'->3' (-) Promoter sequence AT3G50480.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 18 | - | 18744069 | -165 |
TSS peak | A | 13 | - | 18743920 | -16 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 18744072 | -168 |
TSS clone | T | clone | - | 18744068 | -164 |
TSS clone | C | clone | - | 18744067 | -163 |
TSS clone | A | clone | - | 18744032 | -128 |
TSS clone | A | clone | - | 18744031 | -127 |
TSS clone | A | clone | - | 18743971 | -67 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTC | - | 18744061 | 18744068 | -157 | -164 |
Y Patch | CATCTCTCTCCTCTT | - | 18744103 | 18744117 | -199 | -213 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCGTCGTT | - | 18744051 | 18744058 | -147 | -154 | |||
AtREG648 | TCGTCGTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTGTCGTT | - | 18744123 | 18744131 | -219 | -227 | |||
AtREG599 | GGTGTCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
REG | GGCCTTTG | - | 18744166 | 18744173 | -262 | -269 | |||
AtREG656 | GGCCTTTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CAAAACGCG | - | 18744176 | 18744184 | -272 | -280 | |||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 18733155 | AT3G50480.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 18733062 | AT3G50480.1 |
TSS clone | T | clone | + | 18733139 | AT3G50480.1 |
TSS clone | A | clone | + | 18733168 | AT3G50480.1 |
TSS clone | A | clone | + | 18733176 | AT3G50480.1 |
TSS clone | T | clone | + | 18733177 | AT3G50480.1 |
TSS clone | A | clone | + | 18733179 | AT3G50480.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAGTCAA | + | 18732928 | 18732935 | AT3G50480.1 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |