PlantPromoterDB promoter information of AT3G50500
Summary of Gene (AT3G50500)
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Overview
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Focused view (chromosome 3: 18733954-18732755)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G50500 5'->3' (-) Promoter sequence AT3G50480.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G50500
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 18 | - | 18744069 | -165 |
| TSS peak | A | 13 | - | 18743920 | -16 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 18744072 | -168 |
| TSS clone | T | clone | - | 18744068 | -164 |
| TSS clone | C | clone | - | 18744067 | -163 |
| TSS clone | A | clone | - | 18744032 | -128 |
| TSS clone | A | clone | - | 18744031 | -127 |
| TSS clone | A | clone | - | 18743971 | -67 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCTC | - | 18744061 | 18744068 | -157 | -164 |
| Y Patch | CATCTCTCTCCTCTT | - | 18744103 | 18744117 | -199 | -213 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGTCGTT | - | 18744051 | 18744058 | -147 | -154 | |||
| AtREG648 | TCGTCGTT | PPDB Motif | PLACE Motif | ||||||
| REG | GGTGTCGTT | - | 18744123 | 18744131 | -219 | -227 | |||
| AtREG599 | GGTGTCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| REG | GGCCTTTG | - | 18744166 | 18744173 | -262 | -269 | |||
| AtREG656 | GGCCTTTG | PPDB Motif | PLACE Motif | ||||||
| REG | CAAAACGCG | - | 18744176 | 18744184 | -272 | -280 | |||
| AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
| AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 4 | + | 18733155 | AT3G50480.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 18733062 | AT3G50480.1 |
| TSS clone | T | clone | + | 18733139 | AT3G50480.1 |
| TSS clone | A | clone | + | 18733168 | AT3G50480.1 |
| TSS clone | A | clone | + | 18733176 | AT3G50480.1 |
| TSS clone | T | clone | + | 18733177 | AT3G50480.1 |
| TSS clone | A | clone | + | 18733179 | AT3G50480.1 |
| TSS clone | T | clone | + | 18733211 | AT3G50480.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAGTCAA | + | 18732928 | 18732935 | AT3G50480.1 | ||||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||