PlantPromoterDB promoter information of AT3G50510.1

Summary of Gene (AT3G50510.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G50510 TAIR NCBI
Gene model	AT3G50510.1
Description	LOB DOMAIN-CONTAINING PROTEIN 28 (LBD28); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) (TAIR:AT2G23660.2); Has 504 Blast hits to 501 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 504; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

#

Overview

Focused view (chromosome 3: 18744298-18743099)

`Genome position from initiation codon` `AT3G50500.1 TSS from cDNA TSS information AT3G50510.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G50510.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 18 - 18744069 AT3G50500.1

TSS peak A 13 - 18743920 AT3G50500.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	18	-	18744069	AT3G50500.1
TSS peak	`A`	13	-	18743920	AT3G50500.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 18744072 AT3G50500.1

TSS clone T clone - 18744068 AT3G50500.1

TSS clone C clone - 18744067 AT3G50500.1

TSS clone A clone - 18744032 AT3G50500.1

TSS clone A clone - 18744031 AT3G50500.1

TSS clone A clone - 18743971 AT3G50500.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	18744072	AT3G50500.1
TSS clone	`T`	clone	-	18744068	AT3G50500.1
TSS clone	`C`	clone	-	18744067	AT3G50500.1
TSS clone	`A`	clone	-	18744032	AT3G50500.1
TSS clone	`A`	clone	-	18744031	AT3G50500.1
TSS clone	`A`	clone	-	18743971	AT3G50500.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCTC - 18744061 18744068 AT3G50500.1

Y Patch CATCTCTCTCCTCTT - 18744103 18744117 AT3G50500.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCTC`	-	18744061	18744068	AT3G50500.1
Y Patch	`CATCTCTCTCCTCTT`	-	18744103	18744117	AT3G50500.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TCGTCGTT - 18744051 18744058 AT3G50500.1

AtREG648 TCGTCGTT PPDB Motif PLACE Motif

REG GGTGTCGTT - 18744123 18744131 AT3G50500.1

AtREG599 GGTGTCGT PPDB Motif PLACE Motif

AtREG527 GTGTCGTT DREB1Aox PPDB Motif PLACE Motif

REG GGCCTTTG - 18744166 18744173 AT3G50500.1

AtREG656 GGCCTTTG PPDB Motif PLACE Motif

REG CAAAACGCG - 18744176 18744184 AT3G50500.1

AtREG585 CAAAACGC PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG566 AAAACGCG PPDB Motif AAACG(C/G) PLACE Motif