Summary of Gene (AT3G50520.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G50520.1 5'->3' (+) Promoter sequence AT3G50500.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 18748029 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 18 | - | 18744069 | AT3G50500.1 |
TSS peak | A | 13 | - | 18743920 | AT3G50500.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 18744072 | AT3G50500.1 |
TSS clone | T | clone | - | 18744068 | AT3G50500.1 |
TSS clone | C | clone | - | 18744067 | AT3G50500.1 |
TSS clone | A | clone | - | 18744032 | AT3G50500.1 |
TSS clone | A | clone | - | 18744031 | AT3G50500.1 |
TSS clone | A | clone | - | 18743971 | AT3G50500.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTC | - | 18744061 | 18744068 | AT3G50500.1 | |
Y Patch | CATCTCTCTCCTCTT | - | 18744103 | 18744117 | AT3G50500.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCGTCGTT | - | 18744051 | 18744058 | AT3G50500.1 | ||||
AtREG648 | TCGTCGTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTGTCGTT | - | 18744123 | 18744131 | AT3G50500.1 | ||||
AtREG599 | GGTGTCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
REG | GGCCTTTG | - | 18744166 | 18744173 | AT3G50500.1 | ||||
AtREG656 | GGCCTTTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CAAAACGCG | - | 18744176 | 18744184 | AT3G50500.1 | ||||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |