PlantPromoterDB promoter information of AT3G50520.1

Summary of Gene (AT3G50520.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G50520 TAIR NCBI
Gene model	AT3G50520.1
Description	phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT5G04120.1); Has 9399 Blast hits to 9238 proteins in 1349 species: Archae - 57; Bacteria - 5794; Metazoa - 739; Fungi - 340; Plants - 143; Viruses - 0; Other Eukaryotes - 2326 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 18770108-18771307)

`Genome position from initiation codon` `AT3G50590.1 TSS from cDNA TSS information AT3G50520.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G50520.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 18748029 -29

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	18748029	-29

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 17 + 18770990 AT3G50590.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	17	+	18770990	AT3G50590.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCTTCTTCCTCT + 18770974 18770989 AT3G50590.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCTTCTTCCTCT`	+	18770974	18770989	AT3G50590.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTAAAGCCCATTTAGGCCCATTAAACGACA + 18770793 18770822 AT3G50590.1

AtREG545 TTAAAGCC                       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC                      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA                     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT                    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372     AGCCCATT                   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386      GCCCATTT                  PPDB Motif GCCCA PLACE Motif

AtREG443       CCCATTTA                 PPDB Motif GCCCA PLACE Motif

AtREG430           TTTAGGCC             PPDB Motif PLACE Motif

AtREG360            TTAGGCCC            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358             TAGGCCCA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354              AGGCCCAT          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361               GGCCCATT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357                GCCCATTA        PPDB Motif GCCCA PLACE Motif

AtREG396                 CCCATTAA       PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG565                      TAAACGAC PPDB Motif PLACE Motif

AtREG569                       AAACGACA PPDB Motif PLACE Motif

REG CCCATTTAGGCCCATAA + 18770833 18770849 AT3G50590.1

AtREG443 CCCATTTA          PPDB Motif GCCCA PLACE Motif

AtREG430     TTTAGGCC      PPDB Motif PLACE Motif

AtREG360      TTAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358       TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354        AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364         GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG394          GCCCATAA PPDB Motif GCCCA PLACE Motif

REG AACGGCGT + 18770851 18770858 AT3G50590.1

AtREG497 AACGGCGT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

REG CCGACCCGG + 18770912 18770920 AT3G50590.1

AtREG375 CCGACCCG PPDB Motif CCGAC PLACE Motif CCGAC

AtREG494 CGACCCGG PPDB Motif PLACE Motif

REG AACCCGACCC + 18770938 18770947 AT3G50590.1

AtREG580 AACCCGAC   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405 ACCCGACC PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442   CCCGACCC PPDB Motif CCGAC PLACE Motif CCGAC