PlantPromoterDB promoter information of AT3G50590.1

Summary of Gene (AT3G50590.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G50590 TAIR NCBI
Gene model	AT3G50590.1
Description	nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 1880 Blast hits to 1646 proteins in 270 species: Archae - 0; Bacteria - 344; Metazoa - 848; Fungi - 287; Plants - 145; Viruses - 23; Other Eukaryotes - 233 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 18770292-18771491)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G50590.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G50590.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 17 + 18770990 -302

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	17	+	18770990	-302

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCTTCTTCCTCT + 18770974 18770989 -318 -303

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCTTCTTCCTCT`	+	18770974	18770989	-318	-303
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTAAAGCCCATTTAGGCCCATTAAACGACA + 18770793 18770822 -499 -470

AtREG545 TTAAAGCC                       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC                      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA                     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT                    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372     AGCCCATT                   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386      GCCCATTT                  PPDB Motif GCCCA PLACE Motif

AtREG443       CCCATTTA                 PPDB Motif GCCCA PLACE Motif

AtREG430           TTTAGGCC             PPDB Motif PLACE Motif

AtREG360            TTAGGCCC            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358             TAGGCCCA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354              AGGCCCAT          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361               GGCCCATT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357                GCCCATTA        PPDB Motif GCCCA PLACE Motif

AtREG396                 CCCATTAA       PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG565                      TAAACGAC PPDB Motif PLACE Motif

AtREG569                       AAACGACA PPDB Motif PLACE Motif

REG CCCATTTAGGCCCATAA + 18770833 18770849 -459 -443

AtREG443 CCCATTTA          PPDB Motif GCCCA PLACE Motif

AtREG430     TTTAGGCC      PPDB Motif PLACE Motif

AtREG360      TTAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358       TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354        AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364         GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG394          GCCCATAA PPDB Motif GCCCA PLACE Motif

REG AACGGCGT + 18770851 18770858 -441 -434

AtREG497 AACGGCGT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

REG CCGACCCGG + 18770912 18770920 -380 -372

AtREG375 CCGACCCG PPDB Motif CCGAC PLACE Motif CCGAC

AtREG494 CGACCCGG PPDB Motif PLACE Motif

REG AACCCGACCC + 18770938 18770947 -354 -345

AtREG580 AACCCGAC   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG405 ACCCGACC PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442   CCCGACCC PPDB Motif CCGAC PLACE Motif CCGAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTAAAGCCCATTTAGGCCCATTAAACGACA`		+	18770793	18770822	-499	-470
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG386	`GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG430	`TTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG396	`CCCATTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG565	`TAAACGAC`		PPDB Motif		PLACE Motif
	AtREG569	`AAACGACA`		PPDB Motif		PLACE Motif
REG	`CCCATTTAGGCCCATAA`		+	18770833	18770849	-459	-443
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG430	`TTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG394	`GCCCATAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`AACGGCGT`		+	18770851	18770858	-441	-434
	AtREG497	`AACGGCGT`		PPDB Motif	`AAACG(C/G), CCAACGG`	PLACE Motif
REG	`CCGACCCGG`		+	18770912	18770920	-380	-372
	AtREG375	`CCGACCCG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG494	`CGACCCGG`		PPDB Motif		PLACE Motif
REG	`AACCCGACCC`		+	18770938	18770947	-354	-345
	AtREG580	`AACCCGAC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG405	`ACCCGACC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`CCCGACCC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None