PlantPromoterDB promoter information of AT3G50830.1
Summary of Gene (AT3G50830.1)
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Overview
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Focused view (chromosome 3: 18896355-18895156)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G50830.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G50830.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | - | 18895501 | -146 |
| TSS peak | G | 5 | - | 18895392 | -37 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 18895495 | -140 |
| TSS clone | G | clone | - | 18895455 | -100 |
| TSS clone | T | clone | - | 18895390 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACGACACGTCAC | - | 18895557 | 18895569 | -202 | -214 | |||
| AtREG527 | AACGACAC | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif | PLACE Motif | |||||
| AtREG478 | CGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG481 | GACACGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | CGGTTTAA | - | 18895603 | 18895610 | -248 | -255 | |||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CAAAACGCG | - | 18895661 | 18895669 | -306 | -314 | |||
| AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
| AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||