PlantPromoterDB promoter information of AT3G51510.1

Summary of Gene (AT3G51510.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G51510 TAIR NCBI
Gene model	AT3G51510.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

#

Overview

Focused view (chromosome 3: 19108118-19109317)

`Genome position from initiation codon` `AT3G51500.1 TSS from cDNA TSS information AT3G51510.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G51510.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 13 + 19108137 -981

TSS peak A 8 + 19109110 -8

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	13	+	19108137	-981
TSS peak	`A`	8	+	19109110	-8

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 19108135 -983

TSS clone C clone + 19108138 -980

TSS clone A clone + 19108139 -979

TSS clone A clone + 19108140 -978

TSS clone A clone + 19109062 -56

TSS clone T clone + 19109070 -48

TSS clone G clone + 19109093 -25

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	19108135	-983
TSS clone	`C`	clone	+	19108138	-980
TSS clone	`A`	clone	+	19108139	-979
TSS clone	`A`	clone	+	19108140	-978
TSS clone	`A`	clone	+	19109062	-56
TSS clone	`T`	clone	+	19109070	-48
TSS clone	`G`	clone	+	19109093	-25

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTCC + 19108127 19108135 -991 -983

Y Patch TTCTCTCTC + 19108162 19108170 -956 -948

Y Patch TCTTCTTCTT + 19109100 19109109 -18 -9

Y Patch TCTCTTCC + 19109136 19109143 18 25

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTCC`	+	19108127	19108135	-991	-983
Y Patch	`TTCTCTCTC`	+	19108162	19108170	-956	-948
Y Patch	`TCTTCTTCTT`	+	19109100	19109109	-18	-9
Y Patch	`TCTCTTCC`	+	19109136	19109143	18	25
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AGTCGGTC + 19107952 19107959 -1166 -1159

AtREG638 AGTCGGTC DREB1Aox, ABA PPDB Motif CCGAC PLACE Motif CCGAC, RCCGAC

REG AAAACCGGTATA + 19108029 19108040 -1089 -1078

AtREG542 AAAACCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG436 AAACCGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG629     CCGGTATA PPDB Motif PLACE Motif

REG CTAAGCCC + 19108045 19108052 -1073 -1066

AtREG634 CTAAGCCC PPDB Motif GCCCA PLACE Motif

REG TTTAACGG + 19108054 19108061 -1064 -1057

AtREG610 TTTAACGG PPDB Motif PLACE Motif YAACKG, CNGTTR

REG TGTCGTTTA + 19108955 19108963 -163 -155

AtREG569 TGTCGTTT PPDB Motif PLACE Motif

AtREG565 GTCGTTTA PPDB Motif PLACE Motif

REG ACCACGTGTCC + 19108969 19108979 -149 -139

AtREG544 ACCACGTG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG382 CCACGTGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366   CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG472    ACGTGTCC ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AGTCGGTC`		+	19107952	19107959	-1166	-1159
	AtREG638	`AGTCGGTC`	DREB1Aox, ABA	PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC, RCCGAC`
REG	`AAAACCGGTATA`		+	19108029	19108040	-1089	-1078
	AtREG542	`AAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`AAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG629	`CCGGTATA`		PPDB Motif		PLACE Motif
REG	`CTAAGCCC`		+	19108045	19108052	-1073	-1066
	AtREG634	`CTAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTTAACGG`		+	19108054	19108061	-1064	-1057
	AtREG610	`TTTAACGG`		PPDB Motif		PLACE Motif	`YAACKG, CNGTTR`
REG	`TGTCGTTTA`		+	19108955	19108963	-163	-155
	AtREG569	`TGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG565	`GTCGTTTA`		PPDB Motif		PLACE Motif
REG	`ACCACGTGTCC`		+	19108969	19108979	-149	-139
	AtREG544	`ACCACGTG`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG382	`CCACGTGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG366	`CACGTGTC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG472	`ACGTGTCC`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None