PlantPromoterDB promoter information of AT3G51820.1

Summary of Gene (AT3G51820.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G51820 TAIR NCBI
Gene model	AT3G51820.1
Description	Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.

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Overview

Focused view (chromosome 3: 19219934-19218735)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G51820.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G51820.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 - 19219097 -163

TSS peak A 8 - 19219010 -76

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	-	19219097	-163
TSS peak	`A`	8	-	19219010	-76

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 19219050 -116

TSS clone C clone - 19219025 -91

TSS clone G clone - 19219022 -88

TSS clone A clone - 19219010 -76

TSS clone A clone - 19219006 -72

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	19219050	-116
TSS clone	`C`	clone	-	19219025	-91
TSS clone	`G`	clone	-	19219022	-88
TSS clone	`A`	clone	-	19219010	-76
TSS clone	`A`	clone	-	19219006	-72

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CAAAGGCC - 19219074 19219081 -140 -147

AtREG656 CAAAGGCC PPDB Motif PLACE Motif

REG TTAAACCGGGCCCATTC - 19219172 19219188 -238 -254

AtREG473 TTAAACCG          PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG         PPDB Motif AACCG(G/A) PLACE Motif

AtREG391        GGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361         GGCCCATT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG643          GCCCATTC PPDB Motif GCCCA PLACE Motif

REG GTTTGGGCTTTG - 19219192 19219203 -258 -269

AtREG474 GTTTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG559     GGGCTTTG PPDB Motif GCCCA PLACE Motif

REG CTAATGGG - 19219208 19219215 -274 -281

AtREG558 CTAATGGG PPDB Motif GCCCA PLACE Motif

REG ACTGGGCCCATTC - 19219231 19219243 -297 -309

AtREG384 ACTGGGCC      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG363 CTGGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422   TGGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391    GGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG643      GCCCATTC PPDB Motif GCCCA PLACE Motif

REG TTTTGGGCTTTAT - 19219261 19219273 -327 -339

AtREG529 TTTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG601      GGCTTTAT PPDB Motif PLACE Motif

REG CCGGTATA - 19219303 19219310 -369 -376

AtREG629 CCGGTATA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CAAAGGCC`		-	19219074	19219081	-140	-147
	AtREG656	`CAAAGGCC`		PPDB Motif		PLACE Motif
REG	`TTAAACCGGGCCCATTC`		-	19219172	19219188	-238	-254
	AtREG473	`TTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG391	`GGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG643	`GCCCATTC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GTTTGGGCTTTG`		-	19219192	19219203	-258	-269
	AtREG474	`GTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG559	`GGGCTTTG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CTAATGGG`		-	19219208	19219215	-274	-281
	AtREG558	`CTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACTGGGCCCATTC`		-	19219231	19219243	-297	-309
	AtREG384	`ACTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG363	`CTGGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG422	`TGGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG391	`GGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG643	`GCCCATTC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTTTGGGCTTTAT`		-	19219261	19219273	-327	-339
	AtREG529	`TTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG365	`GGGCTTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG601	`GGCTTTAT`		PPDB Motif		PLACE Motif
REG	`CCGGTATA`		-	19219303	19219310	-369	-376
	AtREG629	`CCGGTATA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None