PlantPromoterDB promoter information of AT3G52090.1
Summary of Gene (AT3G52090.1)
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Overview
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Focused view (chromosome 3: 19319998-19318799)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G52090.1 5'->3' (-) Promoter sequence AT3G52100.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G52090.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 19319052 | -54 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 19319076 | -78 |
| TSS clone | A | clone | - | 19319059 | -61 |
| TSS clone | A | clone | - | 19319058 | -60 |
| TSS clone | T | clone | - | 19319054 | -56 |
| TSS clone | G | clone | - | 19319052 | -54 |
| TSS clone | A | clone | - | 19319051 | -53 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACGACGTCGT | - | 19319092 | 19319104 | -94 | -106 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG493 | AACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG431 | ACGACGTCGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| REG | AACACGTGGA | - | 19319129 | 19319138 | -131 | -140 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| REG | ATCGGCCC | - | 19319174 | 19319181 | -176 | -183 | |||
| AtREG555 | ATCGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | AGTCGGTT | - | 19319335 | 19319342 | -337 | -344 | |||
| AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC | PLACE Motif | CCGAC, RCCGAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||